aevaCMB User’s Guide¶
aevaCMB Concepts¶
Resources¶
Resources are containers to store annotations or geometries.
Attributes¶
Attributes are features (properties, ontologies, etc.) that can be associated with geometry resources and stored as annotations.
Operations¶
Operations are actions performed on a resource (primarly geometry) and include selection of regions, mesh operations, export, freeform annotation, etc.
aevaCMB Panels¶
Attribute Editor¶
Attribute Editor provides a gateway to template annotations that can be assigned to geometry resources, e.g. tissue type, organ, etc.
Information¶
Displays details about datasets in the Resource Panel such as number of cells, points, and other file statistics.
Operations¶
Operations provide a list of all available actions for the selected resource or its regions (defined sets). One can view all operations by unchecking “limit by selection”. When an operation is selected (either from the operation panel or using one of the toolbar shortcuts), relevant Operation editor will appear under the Operations panel where the user can provide inputs. See aevaCMB Operations for a list.
Output Messages¶
When operations are performed, output messages appear in this panel to inform the user of success or failure.
Properties¶
This panel is inherited from Paraview. It can help change visualization settings for a given resource.
aevaCMB Operations¶
A variety of operations are categorized with access points:
Region selection and editing
At RenderView toolbar
Select Cells On
Select Points On
Select Cells with Polygon
Select Points with Polygon
At Main toolbar
Grow to edges
Select by surface normal
Select by proximity
Select by adjacency
Select all surface primitives
Select the nodes of all selected primitives
Duplicate cells
Intersect side sets
Subtract side sets
Unite side sets
Unreferenced primitives
Annotation
At Operations panel
Associate
Dissociate
Edit freeform attributes
Mesh/geometry modification
At Main toolbar
Reconstruct surface
Smooth surface
Quadratic promotion
Proportional Edit
Imprint Geometry
At Operations panel
NetgenSurfaceRemesher
VolumeMesher
Volume Inspector *At Operations panel
File loading, import/export
At File drop-down menu
Open…
Import Into Resource…
Save Resource
Save Resource As..
Load All Resources…
Save All Resources As…
At Operation panel
Import
Export